Thank you for the videos. I see the problem and confirm it on my machine.
The problem is probably caused by Folders on Top. For some reason Finder references file which would have been on given position if Folders on Top wouldn’t be applied. Your other report about Quick Look has the same root cause:
I’m aware of this and looking for a solution. I hope this won’t affect some serious file manipulation operation like delete or move. That would be very dangerous.