There is this instruction but don’t have a howto solution:
SIP must remain disabled or partially disabled for TotalSpaces2
I find this on the blog, may be of help to others.
In fact, TotalFinder and TotalSpaces2 can work with only the debug and file system protections turned off, and advanced users may want to use this command in the terminal in recovery mode:
csrutil enable --without debug --without fs
The system will complain that this is an unsupported configuration though, and we cannot know if a future update will break it.