I’ve noticed the same behavior, but it happens with any software that has the option to reveal in finder, like image capture, safari downloads and etc… I always get the ghost windows in the middle of the screen.
If I restart finder and disable total finder I can use the reveal in finder normally with the windows appearing in the middle of screen but totally usable and closable.
I’m us gin the lates version of total finder with OSX Mavericks 10.9.5
Thanks!