Order of TotalFinder windows changes after hiding/unhiding

TotalFinder 1.6.17, OS X 10.10.1

I don’t know when this started happening, but sometimes when TotalFinder is hidden/unhidden, the layer order of the open windows changes, i.e. the window that was on top isn’t any more.

So far I can’t see a pattern of when this happens, but it’s pretty annoying. It doesn’t happen every time, and it doesn’t necessarily revert to the same window either.

I am having the same issue with 10.9.5 and it’s making me crazy. Every time I switch back to the finder the order of the windows has changed, and what was the front most window is usually in the back.

This is clearly a big. I hope that it’s fixed soon.

another thing is, when it happens to me, the window displayed on top doesn’t have focus either…

this issue has still not been fixed, along with a growing list of other bugs. is TotalFinder development dead in the water?